609 lines
10 KiB
Nix
609 lines
10 KiB
Nix
{
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rPackages,
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fetchFromGitHub,
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jasp-src,
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jasp-version,
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}:
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with rPackages;
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let
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jaspColumnEncoder-src = fetchFromGitHub {
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owner = "jasp-stats";
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repo = "jaspColumnEncoder";
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rev = "c54987bb25de8963866ae69ad3a6ae5a9a9f1240";
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hash = "sha256-aWfRG7DXO1MYFvmMLkX/xtHvGeIhFRcRDrVBrhkvYuI=";
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};
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jaspGraphs = buildRPackage {
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name = "jaspGraphs-${jasp-version}";
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version = jasp-version;
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src = jasp-src;
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sourceRoot = "${jasp-src.name}/Engine/jaspGraphs";
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propagatedBuildInputs = [
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ggplot2
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gridExtra
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gtable
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lifecycle
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jsonlite
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R6
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RColorBrewer
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rlang
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scales
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viridisLite
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];
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};
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jaspBase = buildRPackage {
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name = "jaspBase-${jasp-version}";
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version = jasp-version;
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src = jasp-src;
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sourceRoot = "${jasp-src.name}/Engine/jaspBase";
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env.INCLUDE_DIR = "../inst/include/jaspColumnEncoder";
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# necessary for R 4.4.0
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hardeningDisable = [ "format" ];
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postPatch = ''
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mkdir -p inst/include
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cp -r --no-preserve=all ${jaspColumnEncoder-src} inst/include/jaspColumnEncoder
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'';
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propagatedBuildInputs = [
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cli
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codetools
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ggplot2
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gridExtra
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gridGraphics
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jaspGraphs
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jsonlite
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lifecycle
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modules
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officer
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pkgbuild
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plyr
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qgraph
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ragg
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R6
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Rcpp
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renv
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remotes
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rjson
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rvg
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svglite
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systemfonts
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withr
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];
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};
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stanova = buildRPackage {
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name = "stanova";
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src = fetchFromGitHub {
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owner = "bayesstuff";
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repo = "stanova";
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rev = "988ad8e07cda1674b881570a85502be7795fbd4e";
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hash = "sha256-tAeHqTHao2KVRNFBDWmuF++H31aNN6O1ss1Io500QBY=";
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};
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propagatedBuildInputs = [
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emmeans
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lme4
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coda
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rstan
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MASS
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];
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};
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bstats = buildRPackage {
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name = "bstats";
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src = fetchFromGitHub {
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owner = "AlexanderLyNL";
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repo = "bstats";
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rev = "42d34c18df08d233825bae34fdc0dfa0cd70ce8c";
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hash = "sha256-N2KmbTPbyvzsZTWBRE2x7bteccnzokUWDOB4mOWUdJk=";
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};
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propagatedBuildInputs = [
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hypergeo
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purrr
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SuppDists
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];
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};
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flexplot = buildRPackage {
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name = "flexplot";
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src = fetchFromGitHub {
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owner = "dustinfife";
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repo = "flexplot";
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rev = "303a03968f677e71c99a5e22f6352c0811b7b2fb";
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hash = "sha256-iT5CdtNk0Oi8gga76L6YtyWGACAwpN8A/yTBy7JJERc=";
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};
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propagatedBuildInputs = [
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cowplot
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MASS
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tibble
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withr
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dplyr
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magrittr
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forcats
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purrr
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plyr
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R6
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ggplot2
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patchwork
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ggsci
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lme4
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party
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mgcv
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rlang
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];
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};
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# conting has been removed from CRAN
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conting' = buildRPackage {
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name = "conting";
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src = fetchFromGitHub {
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owner = "vandenman";
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repo = "conting";
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rev = "03a4eb9a687e015d602022a01d4e638324c110c8";
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hash = "sha256-Sp09YZz1WGyefn31Zy1qGufoKjtuEEZHO+wJvoLArf0=";
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};
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propagatedBuildInputs = [
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mvtnorm
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gtools
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tseries
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coda
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];
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};
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buildJaspModule =
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name: deps:
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buildRPackage {
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name = "${name}-${jasp-version}";
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version = jasp-version;
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src = jasp-src;
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sourceRoot = "${jasp-src.name}/Modules/${name}";
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propagatedBuildInputs = deps;
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};
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in
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{
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engine = {
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inherit jaspBase jaspGraphs;
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};
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modules = rec {
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jaspAcceptanceSampling = buildJaspModule "jaspAcceptanceSampling" [
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abtest
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BayesFactor
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conting'
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ggplot2
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jaspBase
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jaspGraphs
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plyr
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stringr
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vcd
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vcdExtra
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AcceptanceSampling
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];
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jaspAnova = buildJaspModule "jaspAnova" [
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afex
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BayesFactor
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boot
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car
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colorspace
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emmeans
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effectsize
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ggplot2
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jaspBase
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jaspDescriptives
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jaspGraphs
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jaspTTests
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KernSmooth
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matrixStats
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multcomp
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multcompView
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mvShapiroTest
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onewaytests
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plyr
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stringi
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stringr
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restriktor
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];
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jaspAudit = buildJaspModule "jaspAudit" [
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bstats
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extraDistr
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ggplot2
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ggrepel
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jaspBase
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jaspGraphs
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jfa
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];
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jaspBain = buildJaspModule "jaspBain" [
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bain
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lavaan
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ggplot2
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semPlot
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stringr
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jaspBase
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jaspGraphs
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jaspSem
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];
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jaspBsts = buildJaspModule "jaspBsts" [
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Boom
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bsts
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ggplot2
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jaspBase
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jaspGraphs
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matrixStats
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reshape2
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];
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jaspCircular = buildJaspModule "jaspCircular" [
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jaspBase
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jaspGraphs
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circular
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ggplot2
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];
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jaspCochrane = buildJaspModule "jaspCochrane" [
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jaspBase
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jaspGraphs
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jaspDescriptives
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jaspMetaAnalysis
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];
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jaspDescriptives = buildJaspModule "jaspDescriptives" [
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ggplot2
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ggrepel
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jaspBase
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jaspGraphs
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jaspTTests
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forecast
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flexplot
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ggrain
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ggpp
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ggtext
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dplyr
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];
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jaspDistributions = buildJaspModule "jaspDistributions" [
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car
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fitdistrplus
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ggplot2
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goftest
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gnorm
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jaspBase
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jaspGraphs
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MASS
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sgt
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sn
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];
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jaspEquivalenceTTests = buildJaspModule "jaspEquivalenceTTests" [
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BayesFactor
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ggplot2
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jaspBase
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jaspGraphs
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metaBMA
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TOSTER
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jaspTTests
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];
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jaspFactor = buildJaspModule "jaspFactor" [
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ggplot2
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jaspBase
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jaspGraphs
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jaspSem
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lavaan
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psych
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qgraph
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reshape2
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semPlot
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GPArotation
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Rcsdp
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semTools
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];
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jaspFrequencies = buildJaspModule "jaspFrequencies" [
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abtest
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BayesFactor
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bridgesampling
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conting'
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multibridge
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ggplot2
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jaspBase
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jaspGraphs
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plyr
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stringr
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vcd
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vcdExtra
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];
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jaspJags = buildJaspModule "jaspJags" [
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coda
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ggplot2
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ggtext
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hexbin
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jaspBase
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jaspGraphs
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rjags
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runjags
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scales
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stringr
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];
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jaspLearnBayes = buildJaspModule "jaspLearnBayes" [
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extraDistr
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ggplot2
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HDInterval
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jaspBase
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jaspGraphs
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MASS
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MCMCpack
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MGLM
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scales
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ggalluvial
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ragg
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rjags
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runjags
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ggdist
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png
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posterior
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];
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jaspLearnStats = buildJaspModule "jaspLearnStats" [
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extraDistr
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ggplot2
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jaspBase
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jaspGraphs
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jaspDistributions
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jaspDescriptives
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jaspTTests
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ggforce
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tidyr
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igraph
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];
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jaspMachineLearning = buildJaspModule "jaspMachineLearning" [
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kknn
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AUC
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cluster
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colorspace
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DALEX
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dbscan
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e1071
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fpc
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gbm
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Gmedian
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ggparty
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ggdendro
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ggnetwork
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ggplot2
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ggrepel
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ggridges
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glmnet
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jaspBase
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jaspGraphs
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MASS
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mvnormalTest
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neuralnet
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network
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partykit
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plyr
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randomForest
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rpart
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ROCR
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Rtsne
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signal
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];
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jaspMetaAnalysis = buildJaspModule "jaspMetaAnalysis" [
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dplyr
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ggplot2
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jaspBase
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jaspGraphs
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MASS
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metaBMA
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metafor
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psych
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purrr
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rstan
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stringr
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tibble
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tidyr
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weightr
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BayesTools
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RoBMA
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metamisc
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ggmcmc
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pema
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];
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jaspMixedModels = buildJaspModule "jaspMixedModels" [
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afex
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emmeans
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ggplot2
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ggpol
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jaspBase
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jaspGraphs
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lme4
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loo
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mgcv
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rstan
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rstanarm
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stanova
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withr
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];
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jaspNetwork = buildJaspModule "jaspNetwork" [
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bootnet
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BDgraph
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corpcor
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dplyr
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foreach
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ggplot2
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gtools
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HDInterval
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huge
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IsingSampler
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jaspBase
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jaspGraphs
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mvtnorm
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qgraph
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reshape2
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snow
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stringr
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];
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jaspPower = buildJaspModule "jaspPower" [
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pwr
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jaspBase
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jaspGraphs
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];
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jaspPredictiveAnalytics = buildJaspModule "jaspPredictiveAnalytics" [
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jaspBase
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jaspGraphs
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bsts
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bssm
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precrec
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reshape2
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Boom
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lubridate
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prophet
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BART
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EBMAforecast
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imputeTS
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];
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jaspProcess = buildJaspModule "jaspProcess" [
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blavaan
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dagitty
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ggplot2
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ggraph
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jaspBase
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jaspGraphs
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jaspJags
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runjags
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];
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jaspProphet = buildJaspModule "jaspProphet" [
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rstan
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ggplot2
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jaspBase
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jaspGraphs
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prophet
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scales
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];
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jaspQualityControl = buildJaspModule "jaspQualityControl" [
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car
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cowplot
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daewr
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desirability
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DoE_base
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EnvStats
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FAdist
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fitdistrplus
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FrF2
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ggplot2
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ggrepel
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goftest
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ggpp
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irr
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jaspBase
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jaspDescriptives
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jaspGraphs
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mle_tools
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psych
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qcc
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rsm
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Rspc
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tidyr
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tibble
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vipor
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weibullness
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];
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jaspRegression = buildJaspModule "jaspRegression" [
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BAS
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boot
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bstats
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combinat
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emmeans
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ggplot2
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ggrepel
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hmeasure
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jaspAnova
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jaspBase
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jaspDescriptives
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jaspGraphs
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jaspTTests
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lmtest
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logistf
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MASS
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matrixStats
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mdscore
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ppcor
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purrr
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Rcpp
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statmod
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VGAM
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];
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jaspReliability = buildJaspModule "jaspReliability" [
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Bayesrel
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coda
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ggplot2
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ggridges
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irr
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jaspBase
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jaspGraphs
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LaplacesDemon
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lme4
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MASS
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psych
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];
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jaspRobustTTests = buildJaspModule "jaspRobustTTests" [
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RoBTT
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ggplot2
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jaspBase
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jaspGraphs
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];
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jaspSem = buildJaspModule "jaspSem" [
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forcats
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ggplot2
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jaspBase
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jaspGraphs
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lavaan
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cSEM
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reshape2
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semPlot
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semTools
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stringr
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tibble
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tidyr
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];
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jaspSummaryStatistics = buildJaspModule "jaspSummaryStatistics" [
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BayesFactor
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bstats
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jaspBase
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jaspFrequencies
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jaspGraphs
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jaspRegression
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jaspTTests
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jaspAnova
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jaspDescriptives
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SuppDists
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bayesplay
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];
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jaspSurvival = buildJaspModule "jaspSurvival" [
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survival
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survminer
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jaspBase
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jaspGraphs
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];
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jaspTTests = buildJaspModule "jaspTTests" [
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BayesFactor
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car
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ggplot2
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jaspBase
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jaspGraphs
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logspline
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plotrix
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plyr
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];
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jaspTimeSeries = buildJaspModule "jaspTimeSeries" [
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jaspBase
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jaspGraphs
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jaspDescriptives
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forecast
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];
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jaspVisualModeling = buildJaspModule "jaspVisualModeling" [
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flexplot
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jaspBase
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jaspGraphs
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jaspDescriptives
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];
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};
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}
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