242 lines
5.4 KiB
Nix
242 lines
5.4 KiB
Nix
{
|
|
buildPythonPackage,
|
|
lib,
|
|
setuptools,
|
|
stdenv,
|
|
fetchFromGitHub,
|
|
installShellFiles,
|
|
git,
|
|
coreutils,
|
|
versioneer,
|
|
# core
|
|
platformdirs,
|
|
chardet,
|
|
iso8601,
|
|
humanize,
|
|
fasteners,
|
|
packaging,
|
|
patool,
|
|
tqdm,
|
|
annexremote,
|
|
looseversion,
|
|
git-annex,
|
|
# downloaders
|
|
boto3,
|
|
keyrings-alt,
|
|
keyring,
|
|
msgpack,
|
|
requests,
|
|
# publish
|
|
python-gitlab,
|
|
# misc
|
|
argcomplete,
|
|
pyperclip,
|
|
python-dateutil,
|
|
# duecredit
|
|
duecredit,
|
|
# python>=3.8
|
|
distro,
|
|
# win
|
|
colorama,
|
|
# python-version-dependent
|
|
pythonOlder,
|
|
importlib-resources,
|
|
importlib-metadata,
|
|
typing-extensions,
|
|
# tests
|
|
pytestCheckHook,
|
|
p7zip,
|
|
curl,
|
|
httpretty,
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "datalad";
|
|
version = "1.1.3";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "datalad";
|
|
repo = pname;
|
|
rev = "refs/tags/${version}";
|
|
hash = "sha256-Y7P9vRfFUJ5ZhVRTAYeImI9cv1LtWVAeBoBl6wANnrc=";
|
|
};
|
|
|
|
postPatch = ''
|
|
substituteInPlace datalad/distribution/create_sibling.py \
|
|
--replace-fail "/bin/ls" "${coreutils}/bin/ls"
|
|
# Remove vendorized versioneer.py
|
|
rm versioneer.py
|
|
'';
|
|
|
|
nativeBuildInputs = [
|
|
installShellFiles
|
|
git
|
|
];
|
|
|
|
build-system = [
|
|
setuptools
|
|
versioneer
|
|
];
|
|
|
|
dependencies =
|
|
[
|
|
# core
|
|
platformdirs
|
|
chardet
|
|
iso8601
|
|
humanize
|
|
fasteners
|
|
packaging
|
|
patool
|
|
tqdm
|
|
annexremote
|
|
looseversion
|
|
setuptools
|
|
git-annex
|
|
|
|
# downloaders-extra
|
|
# requests-ftp # not in nixpkgs yet
|
|
|
|
# downloaders
|
|
boto3
|
|
keyrings-alt
|
|
keyring
|
|
msgpack
|
|
requests
|
|
|
|
# publish
|
|
python-gitlab
|
|
|
|
# misc
|
|
argcomplete
|
|
pyperclip
|
|
python-dateutil
|
|
|
|
# duecredit
|
|
duecredit
|
|
|
|
# python>=3.8
|
|
distro
|
|
]
|
|
++ lib.optionals stdenv.hostPlatform.isWindows [ colorama ]
|
|
++ lib.optionals (pythonOlder "3.9") [ importlib-resources ]
|
|
++ lib.optionals (pythonOlder "3.10") [ importlib-metadata ]
|
|
++ lib.optionals (pythonOlder "3.11") [ typing-extensions ];
|
|
|
|
postInstall = ''
|
|
installShellCompletion --cmd datalad \
|
|
--bash <($out/bin/datalad shell-completion) \
|
|
--zsh <($out/bin/datalad shell-completion)
|
|
wrapProgram $out/bin/datalad --prefix PYTHONPATH : "$PYTHONPATH"
|
|
'';
|
|
|
|
preCheck = ''
|
|
export HOME=$TMPDIR
|
|
'';
|
|
|
|
# tests depend on apps in $PATH which only will get installed after the test
|
|
disabledTests = [
|
|
# No such file or directory: 'datalad'
|
|
"test_script_shims"
|
|
"test_cfg_override"
|
|
"test_completion"
|
|
"test_nested_pushclone_cycle_allplatforms"
|
|
"test_create_sub_gh3463"
|
|
"test_create_sub_dataset_dot_no_path"
|
|
"test_cfg_passthrough"
|
|
"test_addurls_stdin_input_command_line"
|
|
"test_run_datalad_help"
|
|
"test_status_custom_summary_no_repeats"
|
|
"test_quoting"
|
|
|
|
# No such file or directory: 'git-annex-remote-[...]"
|
|
"test_create"
|
|
"test_ensure_datalad_remote_maybe_enable"
|
|
|
|
# "git-annex: unable to use external special remote git-annex-remote-datalad"
|
|
"test_ria_postclonecfg"
|
|
"test_ria_postclone_noannex"
|
|
"test_ria_push"
|
|
"test_basic_scenario"
|
|
"test_annex_get_from_subdir"
|
|
"test_ensure_datalad_remote_init_and_enable_needed"
|
|
"test_ensure_datalad_remote_maybe_enable[False]"
|
|
"test_ensure_datalad_remote_maybe_enable[True]"
|
|
"test_create_simple"
|
|
"test_create_alias"
|
|
"test_storage_only"
|
|
"test_initremote"
|
|
"test_read_access"
|
|
"test_ephemeral"
|
|
"test_initremote_basic_fileurl"
|
|
"test_initremote_basic_httpurl"
|
|
"test_remote_layout"
|
|
"test_version_check"
|
|
"test_gitannex_local"
|
|
"test_push_url"
|
|
"test_url_keys"
|
|
"test_obtain_permission_root"
|
|
"test_source_candidate_subdataset"
|
|
"test_update_fetch_all"
|
|
"test_add_archive_dirs"
|
|
"test_add_archive_content"
|
|
"test_add_archive_content_strip_leading"
|
|
"test_add_archive_content_zip"
|
|
"test_add_archive_content_absolute_path"
|
|
"test_add_archive_use_archive_dir"
|
|
"test_add_archive_single_file"
|
|
"test_add_delete"
|
|
"test_add_archive_leading_dir"
|
|
"test_add_delete_after_and_drop"
|
|
"test_add_delete_after_and_drop_subdir"
|
|
"test_override_existing_under_git"
|
|
"test_copy_file_datalad_specialremote"
|
|
"test_download_url_archive"
|
|
"test_download_url_archive_from_subdir"
|
|
"test_download_url_archive_trailing_separator"
|
|
"test_download_url_need_datalad_remote"
|
|
"test_datalad_credential_helper - assert False"
|
|
|
|
# need internet access
|
|
"test_clone_crcns"
|
|
"test_clone_datasets_root"
|
|
"test_reckless"
|
|
"test_autoenabled_remote_msg"
|
|
"test_ria_http_storedataladorg"
|
|
"test_gin_cloning"
|
|
"test_nonuniform_adjusted_subdataset"
|
|
"test_install_datasets_root"
|
|
"test_install_simple_local"
|
|
"test_install_dataset_from_just_source"
|
|
"test_install_dataset_from_just_source_via_path"
|
|
"test_datasets_datalad_org"
|
|
"test_get_cached_dataset"
|
|
"test_cached_dataset"
|
|
"test_cached_url"
|
|
"test_anonymous_s3"
|
|
"test_protocols"
|
|
"test_get_versioned_url_anon"
|
|
"test_install_recursive_github"
|
|
"test_failed_install_multiple"
|
|
|
|
# pbcopy not found
|
|
"test_wtf"
|
|
];
|
|
|
|
nativeCheckInputs = [
|
|
p7zip
|
|
pytestCheckHook
|
|
git-annex
|
|
curl
|
|
httpretty
|
|
];
|
|
|
|
pythonImportsCheck = [ "datalad" ];
|
|
|
|
meta = {
|
|
description = "Keep code, data, containers under control with git and git-annex";
|
|
homepage = "https://www.datalad.org";
|
|
license = lib.licenses.mit;
|
|
maintainers = with lib.maintainers; [ renesat ];
|
|
};
|
|
}
|