267 lines
6.2 KiB
Nix
267 lines
6.2 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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pythonAtLeast,
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pythonOlder,
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# build-system
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cython,
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meson-python,
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meson,
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oldest-supported-numpy,
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pkg-config,
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versioneer,
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wheel,
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# propagates
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numpy,
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python-dateutil,
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pytz,
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tzdata,
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# optionals
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beautifulsoup4,
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bottleneck,
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blosc2,
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fsspec,
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gcsfs,
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html5lib,
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jinja2,
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lxml,
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matplotlib,
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numba,
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numexpr,
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odfpy,
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openpyxl,
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psycopg2,
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pyarrow,
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pymysql,
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pyqt5,
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pyreadstat,
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qtpy,
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s3fs,
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scipy,
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sqlalchemy,
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tables,
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tabulate,
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xarray,
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xlrd,
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xlsxwriter,
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zstandard,
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# tests
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adv_cmds,
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glibc,
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glibcLocales,
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hypothesis,
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pytestCheckHook,
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pytest-xdist,
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pytest-asyncio,
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python,
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runtimeShell,
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}:
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let
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pandas = buildPythonPackage rec {
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pname = "pandas";
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version = "2.2.2";
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pyproject = true;
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disabled = pythonOlder "3.9";
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src = fetchFromGitHub {
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owner = "pandas-dev";
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repo = "pandas";
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rev = "refs/tags/v${version}";
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hash = "sha256-+zQKrsJmP3FJeOiYwNH1u96+/ECDHQF39evzur3cKjc=";
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};
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postPatch = ''
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substituteInPlace pyproject.toml \
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--replace-fail "Cython==3.0.5" "Cython>=3.0.5" \
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--replace-fail "meson-python==0.13.1" "meson-python>=0.13.1" \
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--replace-fail "meson==1.2.1" "meson>=1.2.1" \
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--replace-fail "numpy>=2.0.0rc1" "numpy"
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'';
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nativeBuildInputs =
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[
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cython
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meson-python
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meson
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numpy
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pkg-config
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versioneer
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wheel
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]
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++ versioneer.optional-dependencies.toml
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++ lib.optionals (pythonOlder "3.12") [ oldest-supported-numpy ];
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enableParallelBuilding = true;
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propagatedBuildInputs = [
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numpy
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python-dateutil
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pytz
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tzdata
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];
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passthru.optional-dependencies =
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let
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extras = {
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aws = [ s3fs ];
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clipboard = [
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pyqt5
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qtpy
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];
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compression = [ zstandard ];
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computation = [
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scipy
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xarray
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];
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excel = [
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odfpy
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openpyxl
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# TODO: pyxlsb
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xlrd
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xlsxwriter
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];
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feather = [ pyarrow ];
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fss = [ fsspec ];
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gcp = [
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gcsfs
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# TODO: pandas-gqb
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];
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hdf5 = [
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blosc2
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tables
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];
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html = [
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beautifulsoup4
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html5lib
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lxml
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];
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mysql = [
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sqlalchemy
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pymysql
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];
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output_formatting = [
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jinja2
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tabulate
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];
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parquet = [ pyarrow ];
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performance = [
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bottleneck
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numba
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numexpr
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];
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plot = [ matplotlib ];
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postgresql = [
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sqlalchemy
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psycopg2
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];
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spss = [ pyreadstat ];
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sql-other = [ sqlalchemy ];
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xml = [ lxml ];
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};
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in
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extras // { all = lib.concatLists (lib.attrValues extras); };
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doCheck = false; # various infinite recursions
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passthru.tests.pytest = pandas.overridePythonAttrs (_: {
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doCheck = true;
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});
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nativeCheckInputs =
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[
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glibcLocales
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hypothesis
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pytest-asyncio
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pytest-xdist
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pytestCheckHook
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]
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++ lib.flatten (lib.attrValues passthru.optional-dependencies)
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++ lib.optionals (stdenv.hostPlatform.isLinux) [
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# for locale executable
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glibc
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]
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++ lib.optionals (stdenv.hostPlatform.isDarwin) [
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# for locale executable
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adv_cmds
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];
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# don't max out build cores, it breaks tests
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dontUsePytestXdist = true;
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__darwinAllowLocalNetworking = true;
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pytestFlagsArray = [
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# https://github.com/pandas-dev/pandas/blob/main/test_fast.sh
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"-m"
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"'not single_cpu and not slow and not network and not db and not slow_arm'"
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# https://github.com/pandas-dev/pandas/issues/54907
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"--no-strict-data-files"
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"--numprocesses"
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"4"
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];
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disabledTests =
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[
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# AssertionError: Did not see expected warning of class 'FutureWarning'
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"test_parsing_tzlocal_deprecated"
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]
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++ lib.optionals (stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64) [
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# tests/generic/test_finalize.py::test_binops[and_-args4-right] - AssertionError: assert {} == {'a': 1}
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"test_binops"
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# These tests are unreliable on aarch64-darwin. See https://github.com/pandas-dev/pandas/issues/38921.
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"test_rolling"
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]
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++ lib.optional stdenv.hostPlatform.is32bit [
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# https://github.com/pandas-dev/pandas/issues/37398
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"test_rolling_var_numerical_issues"
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];
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# Tests have relative paths, and need to reference compiled C extensions
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# so change directory where `import .test` is able to be resolved
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preCheck =
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''
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export HOME=$TMPDIR
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export LC_ALL="en_US.UTF-8"
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cd $out/${python.sitePackages}/pandas
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''
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# TODO: Get locale and clipboard support working on darwin.
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# Until then we disable the tests.
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+ lib.optionalString stdenv.hostPlatform.isDarwin ''
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# Fake the impure dependencies pbpaste and pbcopy
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echo "#!${runtimeShell}" > pbcopy
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echo "#!${runtimeShell}" > pbpaste
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chmod a+x pbcopy pbpaste
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export PATH=$(pwd):$PATH
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'';
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pythonImportsCheck = [ "pandas" ];
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meta = with lib; {
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# pandas devs no longer test i686, it's commonly broken
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# broken = stdenv.hostPlatform.isi686;
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changelog = "https://pandas.pydata.org/docs/whatsnew/index.html";
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description = "Powerful data structures for data analysis, time series, and statistics";
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downloadPage = "https://github.com/pandas-dev/pandas";
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homepage = "https://pandas.pydata.org";
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license = licenses.bsd3;
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longDescription = ''
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Flexible and powerful data analysis / manipulation library for
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Python, providing labeled data structures similar to R data.frame
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objects, statistical functions, and much more.
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'';
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maintainers = with maintainers; [
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raskin
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knedlsepp
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];
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};
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};
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in
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pandas
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