56 lines
1.2 KiB
Nix
56 lines
1.2 KiB
Nix
{ stdenv
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, lib
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, fetchurl
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, autoPatchelfHook
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, libidn
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, zlib
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, bzip2
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}:
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let
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libidn11 = libidn.overrideAttrs (old: {
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pname = "libidn";
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version = "1.34";
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src = fetchurl {
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url = "mirror://gnu/libidn/libidn-1.34.tar.gz";
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sha256 = "0g3fzypp0xjcgr90c5cyj57apx1cmy0c6y9lvw2qdcigbyby469p";
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};
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});
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in
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stdenv.mkDerivation rec {
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pname = "sratoolkit";
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version = "2.11.3";
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src = fetchurl {
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url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${version}/sratoolkit.${version}-ubuntu64.tar.gz";
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sha256 = "1590lc4cplxr3lhjqci8fjncy67imn2h14qd2l87chmhjh243qvx";
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};
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nativeBuildInputs = [
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autoPatchelfHook
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];
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buildInputs = [
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libidn11
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zlib
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bzip2
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stdenv.cc.cc.lib
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];
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sourceRoot = "sratoolkit.${version}-ubuntu64/bin";
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installPhase = ''
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find -L . -executable -type f -! -name "*remote-fuser*" -exec install -m755 -D {} $out/bin/{} \;
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'';
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meta = with lib; {
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homepage = "https://github.com/ncbi/sra-tools";
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description = "The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.";
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license = licenses.ncbiPd;
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maintainers = with maintainers; [ thyol ];
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platforms = [ "x86_64-linux" ];
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};
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}
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