121 lines
2.2 KiB
Nix
121 lines
2.2 KiB
Nix
{
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lib,
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buildPythonPackage,
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dm-tree,
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fetchFromGitHub,
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emcee,
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h5netcdf,
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matplotlib,
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netcdf4,
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numba,
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numpy,
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pandas,
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setuptools,
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cloudpickle,
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pytestCheckHook,
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scipy,
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packaging,
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pythonOlder,
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typing-extensions,
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xarray,
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xarray-einstats,
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zarr,
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ffmpeg,
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h5py,
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jaxlib,
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torchvision,
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jax,
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# , pymc3 (circular dependency)
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pyro-ppl,
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#, pystan (not packaged)
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numpyro,
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bokeh,
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}:
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buildPythonPackage rec {
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pname = "arviz";
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version = "0.18.0";
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pyproject = true;
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disabled = pythonOlder "3.10";
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src = fetchFromGitHub {
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owner = "arviz-devs";
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repo = "arviz";
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rev = "refs/tags/v${version}";
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hash = "sha256-SZRqSqChQBSA9/jBXN2ds9hh6TI3qZksHai1j2oVsq0=";
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};
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build-system = [
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packaging
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setuptools
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];
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dependencies = [
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dm-tree
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h5netcdf
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matplotlib
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netcdf4
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numpy
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pandas
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scipy
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typing-extensions
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xarray
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xarray-einstats
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];
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nativeCheckInputs = [
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cloudpickle
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emcee
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ffmpeg
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h5py
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jax
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jaxlib
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numba
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numpyro
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# pymc3 (circular dependency)
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pyro-ppl
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# pystan (not packaged)
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pytestCheckHook
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torchvision
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zarr
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bokeh
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];
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preCheck = ''
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export HOME=$(mktemp -d);
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'';
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pytestFlagsArray = [ "arviz/tests/base_tests/" ];
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disabledTests = [
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# Tests require network access
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"test_plot_ppc_transposed"
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"test_plot_separation"
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"test_plot_trace_legend"
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"test_cov"
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# countourpy is not available at the moment
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"test_plot_kde"
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"test_plot_kde_2d"
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"test_plot_pair"
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# Array mismatch
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"test_plot_ts"
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# The following two tests fail in a common venv-based setup.
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# An issue has been opened upstream: https://github.com/arviz-devs/arviz/issues/2282
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"test_plot_ppc_discrete"
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"test_plot_ppc_discrete_save_animation"
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# Assertion error
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"test_data_zarr"
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"test_plot_forest"
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];
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pythonImportsCheck = [ "arviz" ];
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meta = with lib; {
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description = "Library for exploratory analysis of Bayesian models";
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homepage = "https://arviz-devs.github.io/arviz/";
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changelog = "https://github.com/arviz-devs/arviz/blob/v${version}/CHANGELOG.md";
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license = licenses.asl20;
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maintainers = with maintainers; [ omnipotententity ];
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};
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}
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