75 lines
1.6 KiB
Nix
75 lines
1.6 KiB
Nix
{
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stdenv,
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lib,
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buildPythonPackage,
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fetchPypi,
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deprecated,
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hopcroftkarp,
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joblib,
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matplotlib,
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numpy,
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scikit-learn,
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scipy,
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pytestCheckHook,
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pythonAtLeast,
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pythonOlder,
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}:
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buildPythonPackage rec {
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pname = "persim";
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version = "0.3.5";
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format = "setuptools";
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disabled = pythonOlder "3.7";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-qyly3kIx9HQ7zDT0SfUlsqZGqibdXsfW1dL9HNpQZJg=";
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};
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propagatedBuildInputs = [
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deprecated
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hopcroftkarp
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joblib
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matplotlib
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numpy
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scikit-learn
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scipy
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];
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nativeCheckInputs = [ pytestCheckHook ];
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preCheck = ''
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# specifically needed for darwin
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export HOME=$(mktemp -d)
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mkdir -p $HOME/.matplotlib
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echo "backend: ps" > $HOME/.matplotlib/matplotlibrc
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'';
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pythonImportsCheck = [ "persim" ];
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disabledTests = lib.optionals (pythonAtLeast "3.10") [
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# AttributeError: module 'collections' has no attribute 'Iterable'
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"test_empyt_diagram_list"
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"test_empty_diagram_list"
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"test_fit_diagram"
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"test_integer_diagrams"
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"test_lists_of_lists"
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"test_mixed_pairs"
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"test_multiple_diagrams"
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"test_n_pixels"
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# https://github.com/scikit-tda/persim/issues/67
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"test_persistenceimager"
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# ValueError: setting an array element with a sequence
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"test_exact_critical_pairs"
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];
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meta = with lib; {
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description = "Distances and representations of persistence diagrams";
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homepage = "https://persim.scikit-tda.org";
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changelog = "https://github.com/scikit-tda/persim/releases/tag/v${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ ];
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broken = stdenv.isDarwin;
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};
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}
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