77 lines
1.5 KiB
Nix
77 lines
1.5 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchPypi,
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setuptools,
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formulaic,
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click,
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num2words,
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numpy,
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scipy,
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pandas,
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nibabel,
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bids-validator,
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sqlalchemy,
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pytestCheckHook,
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versioneer,
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pythonRelaxDepsHook,
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}:
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buildPythonPackage rec {
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pname = "pybids";
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version = "0.16.5";
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pyproject = true;
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-5MAp5CYlOh1WxsXOE/LHVNm/K4VGFaLKWaaKYwKjQIM=";
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};
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pythonRelaxDeps = [
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"formulaic"
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"sqlalchemy"
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];
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nativeBuildInputs = [
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pythonRelaxDepsHook
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setuptools
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versioneer
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] ++ versioneer.optional-dependencies.toml;
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propagatedBuildInputs = [
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bids-validator
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click
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formulaic
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nibabel
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num2words
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numpy
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pandas
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scipy
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sqlalchemy
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];
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pythonImportsCheck = [ "bids" ];
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nativeCheckInputs = [ pytestCheckHook ];
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disabledTests = [
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# Test looks for missing data
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"test_config_filename"
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# Regression associated with formulaic >= 0.6.0
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# (see https://github.com/bids-standard/pybids/issues/1000)
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"test_split"
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# AssertionError, TypeError
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"test_run_variable_collection_bad_length_to_df_all_dense_var"
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"test_extension_initial_dot"
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"test_to_df"
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];
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meta = with lib; {
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description = "Python tools for querying and manipulating BIDS datasets";
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homepage = "https://github.com/bids-standard/pybids";
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changelog = "https://github.com/bids-standard/pybids/blob/${version}/CHANGELOG.rst";
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license = licenses.mit;
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maintainers = with maintainers; [ jonringer ];
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mainProgram = "pybids";
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};
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}
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