80 lines
1.6 KiB
Nix
80 lines
1.6 KiB
Nix
{
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lib,
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fetchPypi,
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buildPythonPackage,
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pythonOlder,
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rustPlatform,
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bitstring,
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cachetools,
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cffi,
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deprecation,
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iconv,
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matplotlib,
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numpy,
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scipy,
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screed,
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hypothesis,
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pytest-xdist,
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pyyaml,
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pytestCheckHook,
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}:
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buildPythonPackage rec {
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pname = "sourmash";
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version = "4.8.4";
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format = "pyproject";
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disabled = pythonOlder "3.8";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-Q1hMESwzEHGXcd4XW4nLqU8cLTCxrqRgAOr1qB77roo=";
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};
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cargoDeps = rustPlatform.fetchCargoTarball {
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inherit src;
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name = "${pname}-${version}";
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hash = "sha256-HisWvJgx15OfYoMzzqYm1JyY1/jmGXBSZZmuNaKTDjI=";
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};
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nativeBuildInputs = with rustPlatform; [
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cargoSetupHook
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maturinBuildHook
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];
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buildInputs = [ iconv ];
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propagatedBuildInputs = [
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bitstring
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cachetools
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cffi
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deprecation
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matplotlib
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numpy
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scipy
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screed
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];
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pythonImportsCheck = [ "sourmash" ];
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nativeCheckInputs = [
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hypothesis
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pytest-xdist
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pytestCheckHook
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pyyaml
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];
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# TODO(luizirber): Working on fixing these upstream
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disabledTests = [
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"test_compare_no_such_file"
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"test_do_sourmash_index_multiscaled_rescale_fail"
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"test_metagenome_kreport_out_fail"
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];
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meta = with lib; {
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description = "Quickly search, compare, and analyze genomic and metagenomic data sets";
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mainProgram = "sourmash";
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homepage = "https://sourmash.bio";
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changelog = "https://github.com/sourmash-bio/sourmash/releases/tag/v${version}";
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maintainers = with maintainers; [ luizirber ];
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license = licenses.bsd3;
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};
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}
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