depot/third_party/nixpkgs/pkgs/applications/science/biology/jbrowse/default.nix
Default email 5c370c0b2a Project import generated by Copybara.
GitOrigin-RevId: 33d1e753c82ffc557b4a585c77de43d4c922ebb5
2024-05-15 17:35:15 +02:00

38 lines
1.2 KiB
Nix

{ lib, fetchurl, appimageTools, wrapGAppsHook3 }:
let
pname = "jbrowse";
version = "2.11.0";
src = fetchurl {
url = "https://github.com/GMOD/jbrowse-components/releases/download/v${version}/jbrowse-desktop-v${version}-linux.AppImage";
sha256 = "sha256-MtcrkDg7OC3PTc6fdeG3O/CdyP3122+2BSzKE7rrtWI=";
};
appimageContents = appimageTools.extractType2 {
inherit pname version src;
};
in
appimageTools.wrapType2 {
inherit pname version src;
unshareIpc = false;
extraInstallCommands = ''
mv $out/bin/jbrowse $out/bin/jbrowse-desktop
install -m 444 -D ${appimageContents}/jbrowse-desktop.desktop $out/share/applications/jbrowse-desktop.desktop
install -m 444 -D ${appimageContents}/jbrowse-desktop.png \
$out/share/icons/hicolor/512x512/apps/jbrowse-desktop.png
substituteInPlace $out/share/applications/jbrowse-desktop.desktop \
--replace 'Exec=AppRun --no-sandbox' 'Exec=jbrowse-desktop'
'';
meta = with lib; {
description = "The next-generation genome browser";
mainProgram = "jbrowse-desktop";
homepage = "https://jbrowse.org/jb2/";
license = licenses.asl20;
maintainers = with maintainers; [ benwbooth ];
platforms = [ "x86_64-linux" ];
};
}