75 lines
1.7 KiB
Nix
75 lines
1.7 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, pythonOlder
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, pytestCheckHook
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, lxml
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, matplotlib
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, networkx
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, pandas
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, requests
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, six
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}:
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buildPythonPackage rec {
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pname = "pyxnat";
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version = "1.6";
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format = "setuptools";
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disabled = pythonOlder "3.8";
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# PyPI dist missing test configuration files:
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src = fetchFromGitHub {
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owner = "pyxnat";
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repo = "pyxnat";
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rev = "refs/tags/${version}";
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hash = "sha256-QejYisvQFN7CsDOx9wAgTHmRZcSEqgIr8twG4XucfZ4=";
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};
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propagatedBuildInputs = [
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lxml
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requests
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six
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];
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# future is not used, and pathlib is installed part of python38+
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# w/o an external package
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prePatch = ''
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substituteInPlace setup.py \
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--replace "pathlib>=1.0" "" \
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--replace "future>=0.16" ""
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sed -i '/--cov/d' setup.cfg
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'';
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nativeCheckInputs = [
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pytestCheckHook
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matplotlib
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networkx
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pandas
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];
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preCheck = ''
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export PYXNAT_SKIP_NETWORK_TESTS=1
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'';
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pytestFlagsArray = [ "pyxnat" ];
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disabledTestPaths = [
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# try to access network even though PYXNAT_SKIP_NETWORK_TESTS is set:
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"pyxnat/tests/pipelines_test.py"
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"pyxnat/tests/search_test.py"
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"pyxnat/tests/user_and_project_management_test.py"
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];
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disabledTests = [
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# try to access network even though PYXNAT_SKIP_NETWORK_TESTS is set:
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"test_ashs_volumes"
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"test_inspector_structure"
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];
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pythonImportsCheck = [ "pyxnat" ];
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meta = with lib; {
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homepage = "https://pyxnat.github.io/pyxnat";
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description = "Python API to XNAT";
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mainProgram = "sessionmirror.py";
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changelog = "https://github.com/pyxnat/pyxnat/releases/tag/${version}";
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license = licenses.bsd3;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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