54 lines
1.1 KiB
Nix
54 lines
1.1 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchPypi,
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glibcLocales,
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importlib-metadata,
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numpy,
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pytestCheckHook,
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pythonOlder,
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setuptools,
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setuptools-scm,
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}:
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buildPythonPackage rec {
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pname = "pyfaidx";
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version = "0.8.1.2";
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pyproject = true;
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disabled = pythonOlder "3.7";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-2EUkcEVbHnePk5aUR9uOok3rRiTHxAdpUWRZy2+HvDM=";
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};
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build-system = [
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setuptools
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setuptools-scm
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];
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dependencies = [ importlib-metadata ];
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nativeCheckInputs = [
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glibcLocales
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numpy
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pytestCheckHook
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];
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disabledTestPaths = [
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# FileNotFoundError: [Errno 2] No such file or directory: 'data/genes.fasta.gz'
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"tests/test_Fasta_bgzip.py"
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];
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pythonImportsCheck = [ "pyfaidx" ];
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meta = with lib; {
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description = "Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index";
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homepage = "https://github.com/mdshw5/pyfaidx";
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changelog = "https://github.com/mdshw5/pyfaidx/releases/tag/v${version}";
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license = licenses.bsd3;
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maintainers = with maintainers; [ jbedo ];
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mainProgram = "faidx";
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};
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}
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